PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G116300.1
Common NameB456_003G116300, LOC105788636
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 555aa    MW: 60768.6 Da    PI: 5.5055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G116300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.8e-12369411754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Gorai.003G116300.1 369 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 411
                         79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58362411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-16365434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9368411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14368417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-12369415No hitNo description
Gene3DG3DSA:4.10.280.101.4E-15369424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.14E-4483524No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MLPRVSGGVI WMEDKEDEDS ASWNRTSYNS SNNNNNNNSG VIMENKEDMG TFSTFKSMLD  60
DEWYVGNNSI SSHQDIRDLS FTSNLGDHHQ DNLLLHHHSL PSVDSSSSCS PSSSVFNHLD  120
PSQVQYFCQP KPNLSSILNF VSNSPLDHGF DLSEIGFLDN QATIGTTLLN RGNAGVLGSL  180
TDLGHDNHLD PANLCPEAQF SSSRIVQLPE NGTGFAGFEG FDENPGNALF LKRSKLLRPL  240
ESCPSVGAQP TLFQKRAAMR KNSADSGPNF GVLDGGKFSV SSGTEGDKGK KEMGKEENEK  300
RKINNRDDVE DVSIDESALN YDSDEFTENT KVEETLKNGG NTINANTNAT GGDQNQKGKR  360
KGLPAKNLMA ERRRRKKLND RLYMLRSVVP KISKMDRASI LGDAIEYLKE LLQRINDLHN  420
ELESTLPSSS LTPTTSSFHP LTPTPATFPS RIKDELGPSS SPGLNGQPAR VEVRLREGKA  480
VNIHMFCGRR PGLLLSIIRA LDNLGLDAQQ AVISCFNGFS MDIFRAEQCK EGQDINPGNI  540
KAVLLDSTGF PNMI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358376KRKGLPAKNLMAERRRRKK
2370377ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471050.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-133ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0D2NZV60.0A0A0D2NZV6_G
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-109bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]